PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000973.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 330aa    MW: 38305.7 Da    PI: 5.4899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000973.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.13.2e-31151401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWk 84 
                              lppG+ F P d+e+ + yL +kv+g+ ++  +vi+e+diy+++P++Lp  ++ ++   yfF+k+dkk+++gkr nr tk  +g W+
  Itr_sc000973.1_g00002.1  15 LPPGLIFAPFDKEIFKSYLLPKVKGEYFHP-QVIPEFDIYQCQPSQLP-GLDPKQVFSYFFTKTDKKHQNGKRLNRFTKdqKGHWR 98 
                              79*************************999.89***************.444444566******************777679**** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               t k +e++++ +++++g k++Lv+     ++ +kt+W+mhey l
  Itr_sc000973.1_g00002.1  99 ITSKIQEITEEdGKTVIGRKNVLVYM---YENKVKTNWIMHEYML 140
                              **********95666799******98...455579********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-3414165IPR003441NAC domain
PROSITE profilePS5100536.53915166IPR003441NAC domain
PfamPF023656.0E-1616139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGDSVEEEPE WKKTLPPGLI FAPFDKEIFK SYLLPKVKGE YFHPQVIPEF DIYQCQPSQL  60
PGLDPKQVFS YFFTKTDKKH QNGKRLNRFT KDQKGHWRIT SKIQEITEED GKTVIGRKNV  120
LVYMYENKVK TNWIMHEYML DHNYANKNNK GDKLDTSVVV CRIYERKGKN NCENNSDESE  180
VIRDVEQKHK RGSSSSSSQS DDPGESSSRD KRSKRLCINN QTSLNSTPLD VQQPAATMMM  240
QTTYWEEQPL QPLSNHQLAS NNNGCYPFDA QLNSVPQQPA TYRDELQLPN FDPMKKLIPQ  300
PPKEPNLNVE EKQDDDDSDD FNFDTDSFFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2161678166NO APICAL MERISTEM PROTEIN
1ut4_B1e-2161678166NO APICAL MERISTEM PROTEIN
1ut7_A1e-2161678166NO APICAL MERISTEM PROTEIN
1ut7_B1e-2161678166NO APICAL MERISTEM PROTEIN
3swm_A1e-21616711169NAC domain-containing protein 19
3swm_B1e-21616711169NAC domain-containing protein 19
3swm_C1e-21616711169NAC domain-containing protein 19
3swm_D1e-21616711169NAC domain-containing protein 19
3swp_A1e-21616711169NAC domain-containing protein 19
3swp_B1e-21616711169NAC domain-containing protein 19
3swp_C1e-21616711169NAC domain-containing protein 19
3swp_D1e-21616711169NAC domain-containing protein 19
4dul_A1e-2161678166NAC domain-containing protein 19
4dul_B1e-2161678166NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1616255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-26NAC domain containing protein 57